APEX1 Gene Summary [Human]

The APEX gene encodes the major AP endonuclease in human cells. It encodes the APEX endonuclease, a DNA repair enzyme with apurinic/apyrimidinic (AP) activity. Such AP activity sites occur frequently in DNA molecules by spontaneous hydrolysis, by DNA damaging agents or by DNA glycosylases that remove specific abnormal bases. The AP sites are the most frequent pre-mutagenic lesions that can prevent normal DNA replication. Splice variants have been found for this gene; all encode the same protein. Disruptions in the biological functions related to APEX are associated with many various malignancies and neurodegenerative diseases.[provided by RefSeq, Dec 2019]

Details

Type
Protein Coding
Official Symbol
APEX1
Official Name
apurinic/apyrimidinic endodeoxyribonuclease 1 [Source:HGNC Symbol;Acc:HGNC:587]
Ensembl ID
ENSG00000100823
Bio databases IDs NCBI: 328 Ensembl: ENSG00000100823
Aliases apurinic/apyrimidinic endodeoxyribonuclease 1
Synonyms APE, APE1, APEN, APEX, APEX NUCLEASE, apurinic/apyrimidinic endodeoxyribonuclease 1, apurinic/apyrimidinic endonuclease 1, APX, HAP1, REF-1
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human APEX1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • phosphodiesterase I
  • 3'-5' exonuclease
  • transcription co-activator
  • transcription co-repressor
  • chromatin binding
  • enzyme
  • double-stranded DNA specific exodeoxyribonuclease
  • 3'-5' exodeoxyribonuclease
  • endonuclease
  • ribonuclease H
  • uracil DNA N-glycosylase
  • phosphoric diester hydrolase
  • oxidoreductase
  • NF-kappaB binding
  • 5' phosphomonoester producing endodeoxyribonuclease
  • metal ion binding
  • Endonuclease/Exonuclease/phosphatase family
  • DNA-(apurinic or apyrimidinic site) lyase
  • protein binding
  • DNA binding
  • binding protein
  • altered base-specific endodeoxyribonuclease
  • double-stranded telomeric DNA binding
  • damaged DNA binding
  • Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily
  • endoribonuclease

Pathways

Biological processes and signaling networks where the APEX1 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • neoplasia
  • lung cancer
  • cancer
  • endometriosis
  • growth failure
  • brain cancer
  • central nervous system cancer
  • head and neck cancer
  • head and neck neoplasia
  • lung adenocarcinoma
regulated by
  • STAT3
  • DT-061
  • lipopolysaccharide
  • doxorubicin
  • hydrogen peroxide
  • Ca2+
  • TP53
  • reactive oxygen species
  • resveratrol
  • tretinoin
role in cell
  • expression in
  • phosphorylation in
  • cell death
  • apoptosis
  • migration
  • proliferation
  • invasion by
  • activation in
  • accumulation in
  • damage in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nuclear fraction
  • perinuclear body
  • Cytoplasm
  • perinuclear region
  • membrane surface
  • ribosome
  • centrosome
  • Endoplasmic Reticulum
  • Mitochondria
  • granules
  • nucleoplasm
  • nucleoli
  • nuclear rim
  • nuclear speckles
  • Nissl substance
  • chromatin

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human APEX1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • DNA repair
  • base-excision repair
  • DNA recombination
  • telomere maintenance
  • cell redox homeostasis
  • regulation of mRNA stability
  • regulation of apoptotic process
  • base-excision repair, gap-filling
  • positive regulation of transcription from RNA polymerase II promoter
  • hypomethylation of CpG island
  • DNA catabolic process
  • negative regulation of transcription, DNA-dependent

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • chromosome, telomeric region
  • centrosome
  • perinuclear region of cytoplasm
  • cytoplasm
  • nuclear speck
  • mitochondrion
  • endoplasmic reticulum
  • nucleolus
  • ribosome
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • chromatin DNA binding
  • 3'-5'-exodeoxyribonuclease activity
  • double-stranded telomeric DNA binding
  • double-stranded DNA specific 3'-5' exodeoxyribonuclease activity
  • endodeoxyribonuclease activity
  • damaged DNA binding
  • apurinic/apyrimidinic endodeoxyribonuclease activity
  • double-stranded DNA specific exodeoxyribonuclease activity
  • 3'-5' exonuclease activity
  • ribonuclease H activity
  • DNA binding
  • protein binding
  • RNA binding
  • uracil DNA N-glycosylase activity
  • phosphodiesterase I activity
  • transcription coactivator activity
  • oxidoreductase activity
  • metal ion binding
  • transcription corepressor activity
  • endonuclease activity
  • site-specific endodeoxyribonuclease activity, specific for altered base
  • DNA-(apurinic or apyrimidinic site) lyase activity
  • phosphoric diester hydrolase activity

Gene-Specific Assays for Results You Can Trust

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