FEN1 Gene Summary [Human]

The protein encoded by this gene removes 5' overhanging flaps in DNA repair and processes the 5' ends of Okazaki fragments in lagging strand DNA synthesis. Direct physical interaction between this protein and AP endonuclease 1 during long-patch base excision repair provides coordinated loading of the proteins onto the substrate, thus passing the substrate from one enzyme to another. The protein is a member of the XPG/RAD2 endonuclease family and is one of ten proteins essential for cell-free DNA replication. DNA secondary structure can inhibit flap processing at certain trinucleotide repeats in a length-dependent manner by concealing the 5' end of the flap that is necessary for both binding and cleavage by the protein encoded by this gene. Therefore, secondary structure can deter the protective function of this protein, leading to site-specific trinucleotide expansions. [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
FEN1
Official Name
flap structure-specific endonuclease 1 [Source:HGNC Symbol;Acc:HGNC:3650]
Ensembl ID
ENSG00000168496
Bio databases IDs NCBI: 2237 Ensembl: ENSG00000168496
Aliases flap structure-specific endonuclease 1, maturation factor-1, DNase IV
Synonyms flap structure-specific endonuclease 1, MF1, RAD2
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human FEN1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • flap structure-specific endonuclease
  • PCNA binding domain
  • 5'-3' exonuclease
  • catalytic domain
  • Xeroderma pigmentosum G I-region
  • XPG I-region
  • enzyme
  • flap endonuclease
  • double-stranded DNA specific exodeoxyribonuclease
  • XPG N-terminal domain
  • protein binding
  • Helix-hairpin-helix class 2 (Pol1 family) motifs
  • magnesium ion binding
  • DNA binding
  • endonuclease
  • H3TH_StructSpec-5'-nucleases
  • damaged DNA binding
  • ribonuclease H
  • exonuclease
  • double-stranded DNA binding
  • Xeroderma pigmentosum G N-region
  • manganese ion binding
  • loop domain
  • PIN (PilT N terminus) domain: Superfamily

Pathways

Biological processes and signaling networks where the FEN1 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • Waldenström macroglobulinemia
  • neoplasia
  • cancer
  • epithelial cancer
  • colon cancer
  • castration refractory prostate carcinoma
  • castration refractory prostate cancer
  • mammary neoplasm
  • gastrointestinal neoplasia
  • organismal death
regulated by
role in cell
  • apoptosis
  • function
  • expression in
  • quantity
  • migration
  • proliferation
  • growth
  • number
  • damage in
  • cell death

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nuclear fraction
  • Mitochondria
  • nucleoplasm
  • nucleoli
  • telomeres

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human FEN1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • nucleic acid metabolic process
  • DNA repair
  • UV protection
  • DNA replication
  • telomere maintenance via semi-conservative replication
  • double-strand break repair via homologous recombination
  • base-excision repair, gap-filling
  • DNA replication, removal of RNA primer
  • memory
  • positive regulation of sister chromatid cohesion
  • double-strand break repair

Cellular Component

Where in the cell the gene product is active
  • chromosome, telomeric region
  • nucleus
  • mitochondrion
  • membrane
  • macromolecular complex
  • nucleolus
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • 5'-flap endonuclease activity
  • double-stranded DNA binding
  • damaged DNA binding
  • 5'-3' exonuclease activity
  • magnesium ion binding
  • DNA binding
  • ribonuclease H activity
  • double-stranded DNA specific exodeoxyribonuclease activity
  • protein binding
  • exonuclease activity
  • flap endonuclease activity
  • endonuclease activity
  • manganese ion binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.