SF3A3 Gene Summary [Human]

This gene encodes subunit 3 of the splicing factor 3a protein complex. The splicing factor 3a heterotrimer includes subunits 1, 2 and 3 and is necessary for the in vitro conversion of 15S U2 snRNP into an active 17S particle that performs pre-mRNA splicing. Subunit 3 interacts with subunit 1 through its amino-terminus while the zinc finger domain of subunit 3 plays a role in its binding to the 15S U2 snRNP. This gene has a pseudogene on chromosome 20. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2016]

Details

Type
Protein Coding
Official Symbol
SF3A3
Official Name
splicing factor 3a subunit 3 [Source:HGNC Symbol;Acc:HGNC:10767]
Ensembl ID
ENSG00000183431
Bio databases IDs NCBI: 10946 Ensembl: ENSG00000183431
Aliases splicing factor 3a subunit 3
Synonyms 4930512K19Rik, LRRGT00093, PRP9, PRPF9, SAP61, SF3a60, splicing factor 3a subunit 3, splicing factor 3a, subunit 3
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human SF3A3 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • SF3a60/Prp9 C-terminal
  • Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9
  • protein binding
  • zinc finger domain
  • Splicing factor SF3a60 binding domain
  • Replication stress response SDE2 C-terminal

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • thyroiditis
  • non-small cell lung cancer
regulated by
role in cell
  • cell viability
  • expression in
  • growth
  • phosphorylation in
  • splicing by
  • alternative splicing in
  • processing in
  • homologous recombination in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nuclear fraction
  • catalytic step 2 spliceosome
  • spliceosomes
  • nucleoplasm
  • interchromatin granule clusters
  • nuclear speckles
  • plasma

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human SF3A3 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • RNA splicing, via transesterification reactions
  • mRNA processing
  • nuclear mRNA 3'-splice site recognition
  • nuclear mRNA splicing, via spliceosome

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • catalytic step 2 spliceosome
  • nuclear speck
  • spliceosomal complex
  • U2-type spliceosomal complex
  • U2-type precatalytic spliceosome
  • U2 snRNP
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • zinc ion binding
  • protein binding
  • RNA binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.