Cxcl12 Gene Summary [Mouse]

This gene encodes a member of the alpha chemokine protein family. The encoded protein is secreted and functions as the ligand for the G-protein coupled receptor, chemokine (C-X-C motif) receptor 4. The encoded protein plays a role in many diverse cellular functions, including embryogenesis, immune surveillance, inflammation response, tissue homeostasis, and tumor growth and metastasis. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2013]

Details

Type
Protein Coding
Official Symbol
Cxcl12
Official Name
chemokine (C-X-C motif) ligand 12 [Source:MGI Symbol;Acc:MGI:103556]
Ensembl ID
ENSMUSG00000061353
Bio databases IDs NCBI: 20315 Ensembl: ENSMUSG00000061353
Aliases chemokine (C-X-C motif) ligand 12
Synonyms CXCL12 isoform 1, C-X-C motif chemokine ligand 12, hIRH, IRH, LOC105378278, PBSF, SCYB12, SDF, SDF1, SDF-1a, SDF-1alpha, SDF-1α, Stromal cell derived factor 1, TLSF, TPAR1
Species
Mouse, Mus musculus
OrthologiesHumanRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in mouse Cxcl12 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • chemokine
  • Small cytokines (intecrine/chemokine), interleukin-8 like
  • chemokine receptor binding
  • integrin binding
  • heparin binding domain
  • protein binding
  • receptor binding
  • cytokine
  • N-terminal methionine
  • CXCR chemokine receptor binding

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
binds
disease
  • neoplasia
  • hemangioma
  • hepatocellular carcinoma
  • immunodeficiency
  • oral squamous cell carcinoma
  • plasma cell myeloma
  • non-Hodgkin disease
  • gastric cancer
  • bladder cancer
  • endometrial cancer
regulated by
  • genistein
  • 4-phenylbutyric acid
  • ciprofibrate
  • homocysteine
  • beta-estradiol
  • methotrexate
  • RIGI
  • BILF1
  • blood platelets
  • VHL
role in cell
  • growth
  • apoptosis
  • cell death
  • expression in
  • accumulation in
  • quantity
  • number
  • invasion
  • production in
  • migration

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Extracellular Space
  • inner surface
  • Cytoplasm
  • cell surface
  • intracellular space
  • perinuclear region
  • cellular membrane
  • Nucleus
  • Plasma Membrane
  • basolateral cell surfaces
  • plasma membrane extracellular face
  • nuclear scaffolds
  • alpha granules
  • neurites
  • extracellular matrix
  • membrane rafts
  • axons
  • exosomes
  • plasma

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the mouse Cxcl12 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • regulation of actin polymerization or depolymerization
  • positive regulation of neuron differentiation
  • telencephalon cell migration
  • axon guidance
  • adult locomotory behavior
  • cell adhesion
  • positive regulation of cell adhesion
  • response to virus
  • cell chemotaxis
  • chemotaxis
  • neuron migration
  • response to hypoxia
  • immune response
  • induction of positive chemotaxis
  • chemokine (C-X-C motif) ligand 12 signaling pathway
  • G-protein coupled receptor signaling pathway
  • positive regulation of monocyte chemotaxis
  • signal transduction
  • CXCL12-activated CXCR4 signaling pathway
  • blood circulation
  • positive regulation of axon extension involved in axon guidance
  • defense response
  • response to peptide hormone stimulus
  • cellular calcium ion homeostasis
  • positive regulation of calcium ion import
  • positive regulation of T cell migration
  • negative regulation of dendritic cell apoptotic process
  • chemokine-mediated signaling pathway
  • detection of mechanical stimulus involved in sensory perception of pain
  • organ regeneration
  • positive regulation of endothelial cell proliferation
  • positive regulation of dopamine secretion
  • detection of temperature stimulus involved in sensory perception of pain
  • integrin activation
  • positive regulation of cell migration

Cellular Component

Where in the cell the gene product is active
  • extracellular vesicular exosome
  • external side of plasma membrane
  • extracellular region

Molecular Function

What the gene product does at the molecular level
  • growth factor activity
  • protein binding
  • CXCR chemokine receptor binding
  • integrin binding
  • chemokine activity
  • receptor binding
  • chemokine receptor binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.