Smad9 Gene Summary [Rat]

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific; I-SMAD binding activity; and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in several processes, including Mullerian duct regression; positive regulation of DNA-templated transcription; and response to hypoxia. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of heteromeric SMAD protein complex. Biomarker of pulmonary hypertension. Human ortholog(s) of this gene implicated in primary pulmonary hypertension. Orthologous to human SMAD9 (SMAD family member 9). [provided by Alliance of Genome Resources, Jul 2025]

Details

Type
Protein Coding
Official Symbol
Smad9
Official Name
SMAD family member 9 [Source:RGD Symbol;Acc:71004]
Ensembl ID
ENSRNOG00000000091
Bio databases IDs NCBI: 103691556 NCBI: 85435 Ensembl: ENSRNOG00000000091
Aliases SMAD family member 9
Synonyms LOC103691556, MADH6, Madh8, MADH9, PPH2, SMAD8, SMAD8/9, SMAD8A, SMAD8B, SMAD family member 9
Species
Rat, Rattus norvegicus
OrthologiesHumanMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Smad9 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • RNA polymerase II transcription factor activity, sequence-specific DNA binding
  • transcription regulator
  • MH2 domain
  • nucleic acid binding
  • double-stranded DNA binding
  • MH1 domain
  • C-terminal Mad Homology 2 (MH2) domain
  • protein binding
  • sequence-specific DNA binding
  • transcription factor activity
  • N-terminal Mad Homology 1 (MH1) domain

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • pulmonary hypertensive arterial disease
  • epithelial cancer
  • prostatic carcinoma
  • prostate cancer
  • colorectal cancer
  • myocardial infarction
  • BCR-ABL negative atypical chronic myeloid leukemia
  • spontaneous preterm birth
  • coronary artery disease
  • primary pulmonary hypertension 2
regulated by
regulates
  • BMP
  • DNA promoter
  • DNA endogenous promoter
  • RNA polymerase II
  • SMAD
  • ALPL
  • iron ion
  • SMAD9
role in cell
  • expression in
  • differentiation
  • abnormal morphology
  • maturation
  • osteogenic differentiation
  • homeostasis in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • Cytoplasm
  • cytosol
  • nucleoplasm
  • zona pellucida
  • chromatin

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the rat Smad9 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • cellular response to BMP stimulus
  • BMP signaling pathway
  • SMAD protein signal transduction
  • transforming growth factor beta receptor signaling pathway
  • cell differentiation
  • anatomical structure morphogenesis
  • positive regulation of transcription from RNA polymerase II promoter
  • regulation of transcription from RNA polymerase II promoter

Cellular Component

Where in the cell the gene product is active
  • SMAD protein complex
  • nucleus
  • cytoplasm
  • SMAD2-SMAD3 protein complex
  • cytosol
  • chromatin
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • sequence-specific DNA binding transcription factor activity
  • protein binding
  • metal ion binding
  • RNA polymerase II core promoter proximal region sequence-specific DNA binding
  • I-SMAD binding
  • sequence-specific DNA binding RNA polymerase II transcription factor activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.