Sdc2 Gene Summary [Rat]

The protein encoded by this gene is a transmembrane (type I) heparan sulfate proteoglycan and is a member of the syndecan proteoglycan family. The syndecans mediate cell binding, cell signaling, and cytoskeletal organization and syndecan receptors are required for internalization of the HIV-1 tat protein. The syndecan-2 protein functions as an integral membrane protein and participates in cell proliferation, cell migration and cell-matrix interactions via its receptor for extracellular matrix proteins. Altered syndecan-2 expression has been detected in several different tumor types. [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
Sdc2
Official Name
syndecan 2 [Source:RGD Symbol;Acc:3649]
Ensembl ID
ENSRNOG00000004936
Bio databases IDs NCBI: 25615 Ensembl: ENSRNOG00000004936
Aliases syndecan 2
Synonyms 4833414L08RIK, CD362, heparan sulphate proteoglycan 1, HSPG, HSPG1, SYND2, syndecan-2
Species
Rat, Rattus norvegicus
OrthologiesHumanMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Sdc2 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • extracellular domain
  • EFYA motif
  • ectodomain
  • protein binding
  • identical protein binding
  • PDZ-domain binding
  • putative band 4.1 homologues' binding motif
  • Syndecan domain
  • cytoplasmic domain
  • transmembrane domain
  • glycosaminoglycan attachment site
  • intracellular domain
  • C2 region of the Syndecan family

Pathways

Biological processes and signaling networks where the Sdc2 gene in rat plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • gastric cancer
  • refractive error
  • rheumatoid arthritis
  • neoplasia
  • cutaneous melanoma
  • cutaneous melanoma cancer
  • systemic sclerosis
  • psoriatic arthritis
  • colon adenocarcinoma
  • colon epithelial cancer
regulated by
regulates
role in cell
  • expression in
  • deposition
  • adhesion
  • proliferation
  • growth
  • apoptosis
  • activation in
  • morphology
  • signaling in
  • phosphorylation in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • Golgi lumen
  • glutaminergic synapse
  • Cytoplasm
  • cell surface
  • cellular membrane
  • endoplasmic reticulum lumen
  • presynaptic membrane
  • postsynaptic membrane
  • lysosomal compartment
  • synaptosomes
  • synapse
  • basal lamina
  • perikaryon
  • dendrites
  • axon terminals
  • basement membrane
  • detergent-soluble fraction

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the rat Sdc2 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • cell migration
  • regulation of dendrite morphogenesis
  • dendrite morphogenesis

Cellular Component

Where in the cell the gene product is active
  • endoplasmic reticulum lumen
  • lysosomal lumen
  • Golgi lumen
  • plasma membrane
  • cell surface

Molecular Function

What the gene product does at the molecular level
  • identical protein binding
  • protein binding
  • PDZ domain binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.