Cldn5 Gene Summary [Rat]

This gene encodes a member of the claudin family. Claudins are integral membrane proteins and components of tight junction strands. Tight junction strands serve as a physical barrier to prevent solutes and water from passing freely through the paracellular space between epithelial or endothelial cell sheets. Mutations in this gene have been found in patients with velocardiofacial syndrome. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, May 2018]

Details

Type
Protein Coding
Official Symbol
Cldn5
Official Name
claudin 5 [Source:RGD Symbol;Acc:68431]
Ensembl ID
ENSRNOG00000045811
Bio databases IDs NCBI: 65131 Ensembl: ENSRNOG00000045811
Aliases claudin 5
Synonyms AWAL, BEC1, claudin 5, CPETRL1, MBEC1, TMDVCF, TMVCF
Species
Rat, Rattus norvegicus
OrthologiesHumanMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Cldn5 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • extracellular domain
  • cytoplasmic domain
  • PMP-22/EMP/MP20/Claudin family
  • extracellular loop
  • protein binding
  • structural molecule
  • identical protein binding

Pathways

Biological processes and signaling networks where the Cldn5 gene in rat plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • leukemia
  • colon epithelial cancer
  • Alzheimer disease
  • Huntington disease
  • colon adenocarcinoma
  • uterine leiomyoma
  • leiomyomatosis
  • non-small cell lung cancer
  • uterine serous papillary cancer
  • tubulo-interstitial fibrosis
regulated by
  • insulin
  • beta-estradiol
  • Immunoglobulin
  • TNF
  • homocysteine
  • 4-phenylbutyric acid
  • LRP1
  • AKT
  • dexamethasone
  • CCL2
role in cell
  • expression in
  • migration
  • proliferation
  • formation
  • injury
  • assembly
  • disruption
  • replication in
  • myelination
  • sensitivity

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Plasma Membrane
  • button-like junction
  • apicolateral membrane
  • cell junction
  • axon component
  • cortical actin cytoskeleton
  • cell surface
  • cell borders
  • cellular membrane
  • intercellular junctions
  • cell-cell contacts
  • lateral plasma membrane
  • Schmidt-Lanterman incisures
  • tight junctions

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the rat Cldn5 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • calcium-independent cell-cell adhesion
  • negative regulation of angiogenesis
  • positive regulation of protein binding
  • cell-cell junction assembly
  • palate development
  • positive regulation of cell proliferation
  • transforming growth factor beta receptor signaling pathway
  • outflow tract morphogenesis
  • cell adhesion
  • myelination
  • negative regulation of vascular permeability
  • learning
  • face morphogenesis
  • negative regulation of gene expression
  • response to ethanol
  • positive regulation of gene expression
  • tight junction assembly
  • maintenance of blood-brain barrier
  • negative regulation of cell migration

Cellular Component

Where in the cell the gene product is active
  • apicolateral plasma membrane
  • lateral plasma membrane
  • paranode region of axon
  • tight junction
  • occluding junction
  • cell-cell junction
  • Schmidt-Lanterman incisure
  • membrane
  • cell junction
  • cortical actin cytoskeleton
  • plasma membrane

Molecular Function

What the gene product does at the molecular level
  • identical protein binding
  • protein binding
  • structural molecule activity

Gene-Specific Assays for Results You Can Trust

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