FUBP1 Gene Summary [Human]

The protein encoded by this gene is a single stranded DNA-binding protein that binds to multiple DNA elements, including the far upstream element (FUSE) located upstream of c-myc. Binding to FUSE occurs on the non-coding strand, and is important to the regulation of c-myc in undifferentiated cells. This protein contains three domains, an amphipathic helix N-terminal domain, a DNA-binding central domain, and a C-terminal transactivation domain that contains three tyrosine-rich motifs. The N-terminal domain is thought to repress the activity of the C-terminal domain. This protein is also thought to bind RNA, and contains 3'-5' helicase activity with in vitro activity on both DNA-DNA and RNA-RNA duplexes. Aberrant expression of this gene has been found in malignant tissues, and this gene is important to neural system and lung development. Binding of this protein to viral RNA is thought to play a role in several viral diseases, including hepatitis C and hand, foot and mouth disease. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2014]

Details

Type
Processed Transcript
Official Symbol
FUBP1
Official Name
far upstream element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4004]
Ensembl ID
ENSG00000162613
Bio databases IDs NCBI: 8880 Ensembl: ENSG00000162613
Aliases far upstream element binding protein 1, FUSE binding protein 1
Synonyms 9530027K12Rik, D3ERTD330E, DNA helicase V, far upstream element binding protein 1, far upstream element (FUSE) binding protein 1, FBP, FBP-1, FUBP, Fubp4, hDH V
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human FUBP1 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • activation domain
  • transcription regulator
  • single-stranded DNA binding
  • K homology (KH) RNA-binding domain, type I
  • KH domain
  • nucleic acid binding
  • double-stranded DNA binding
  • central domain
  • protein binding
  • K homology RNA-binding domain
  • sequence-specific DNA binding

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • 1p/19q co-deletion positive IDH mutation positive oligodendroglioma
  • glioma formation
  • non-small cell lung cancer
  • Waldenström macroglobulinemia
  • hypoplasia
  • cardiac hypertrophy
  • organismal death
  • rheumatoid arthritis
  • bleeding
  • lung carcinoma
regulated by
  • TP53
  • TGFB1
  • CASP3
  • TNF
  • 4-O-carboxymethylascochlorin
  • decitabine
  • cycloheximide
  • PRKN
  • mir-21 (includes others)
  • Z-DEVD-FMK
regulates
  • PTGES
  • DNA endogenous promoter
  • CCNE1
  • MYC
  • leukotriene B4
  • DNA promoter
  • prostaglandin E2
  • CCNH
  • RNA polymerase II
  • FUBP1
role in cell
  • expression in
  • proliferation
  • number
  • apoptosis
  • cell viability
  • function
  • migration by
  • cell division
  • transactivation in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • nucleoplasm
  • synapse
  • plasma

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human FUBP1 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • positive regulation of gene expression
  • regulation of gene expression
  • regulation of transcription from RNA polymerase II promoter

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • cytoplasm
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • RNA binding
  • protein binding
  • mRNA binding
  • single-stranded DNA binding

Gene-Specific Assays for Results You Can Trust

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