CHD3 Gene Summary [Human]

This gene encodes a member of the CHD family of proteins which are characterized by the presence of chromo (chromatin organization modifier) domains and SNF2-related helicase/ATPase domains. This protein is one of the components of a histone deacetylase complex referred to as the Mi-2/NuRD complex which participates in the remodeling of chromatin by deacetylating histones. Chromatin remodeling is essential for many processes including transcription. Autoantibodies against this protein are found in a subset of patients with dermatomyositis. Three alternatively spliced transcripts encoding different isoforms have been described. [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
CHD3
Official Name
chromodomain helicase DNA binding protein 3 [Source:HGNC Symbol;Acc:HGNC:1918]
Ensembl ID
ENSG00000170004
Bio databases IDs NCBI: 1107 Ensembl: ENSG00000170004
Aliases chromodomain helicase DNA binding protein 3
Synonyms 2600010P09Rik, Chd7, chromodomain helicase DNA binding protein 3, HZFH, Mi-2a, Mi2-ALPHA, Mi2-α, MI alpha2, Prp7, Prp9-1, SNIBCPS, ZFH
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human CHD3 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • Chromatin organization modifier domain
  • PHD zinc finger
  • enzyme
  • ATPase
  • Helicase conserved C-terminal domain
  • helicase domain
  • zinc ion binding
  • Type III restriction enzyme, res subunit
  • N-terminal helicase domain of the DEAD-box helicase superfamily
  • DEAD-like helicases superfamily
  • P-loop containing Nucleoside Triphosphate Hydrolases
  • nucleic acid binding
  • helicase superfamily c-terminal domain
  • SNF2-related domain
  • CHD subfamily II, SANT-like domain
  • CR3 domain
  • protein binding
  • DNA dependent ATPase
  • sequence-specific DNA binding
  • CHDNT (NUC034) domain
  • DNA binding
  • CHROMO (CHRromatin Organization Modifier) domains and chromo shadow domains
  • double-stranded DNA binding
  • PHD finger superfamily
  • Class II histone deacetylase complex subunits 2 and 3
  • Chromo (CHRromatin organization MOdifier) domain
  • CHDCT2 (NUC038) domain

Pathways

Biological processes and signaling networks where the CHD3 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • Snijders Blok-Campeau syndrome
  • mental retardation
  • ischemic stroke
  • hereditary disorder
  • prostate cancer
  • epithelial cancer
  • cancer
  • prostatic carcinoma
  • papillary renal cell carcinoma
  • papillary renal cell neoplasia
regulated by
regulates
role in cell
  • organization
  • cycling
  • remodeling

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • Cytoplasm
  • centrosome
  • nucleoplasm
  • nucleoli
  • PML nuclear bodies

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human CHD3 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • negative regulation of transcription from RNA polymerase II promoter
  • spindle organization
  • chromatin remodeling
  • regulation of cell fate specification
  • negative regulation of transcription, DNA-dependent
  • centrosome cycle
  • positive regulation of transcription, DNA-dependent
  • regulation of stem cell differentiation
  • regulation of transcription, DNA-dependent

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • centrosome
  • PML body
  • cytoplasm
  • centriolar satellite
  • NuRD complex
  • nucleolus
  • chromatin
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • ATPase activity
  • ATP binding
  • DNA binding
  • zinc ion binding
  • RNA binding
  • protein binding
  • histone binding
  • transcription regulatory region sequence-specific DNA binding
  • helicase activity
  • chromatin binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.