HDAC9 Gene Summary [Human]

Histones play a critical role in transcriptional regulation, cell cycle progression, and developmental events. Histone acetylation/deacetylation alters chromosome structure and affects transcription factor access to DNA. The protein encoded by this gene has sequence homology to members of the histone deacetylase family. This gene is orthologous to the Xenopus and mouse MITR genes. The MITR protein lacks the histone deacetylase catalytic domain. It represses MEF2 activity through recruitment of multicomponent corepressor complexes that include CtBP and HDACs. This encoded protein may play a role in hematopoiesis. Multiple alternatively spliced transcripts have been described for this gene but the full-length nature of some of them has not been determined. [provided by RefSeq, Jul 2008]

Details

Type
Protein Coding
Official Symbol
HDAC9
Official Name
histone deacetylase 9 [Source:HGNC Symbol;Acc:HGNC:14065]
Ensembl ID
ENSG00000048052
Bio databases IDs NCBI: 9734 Ensembl: ENSG00000048052
Aliases histone deacetylase 9
Synonyms AK143298, ARCND4, AV022454, D030072B18, D030072B18Rik, HD7, HD7B, HD9, HDAC, HDAC7, HDAC7B, HDAC9B, HDAC9FL, HDAC C, HDRP, histone deacetylase 9, LOC100504541, LOC100861990, LOC102552384, MITR, mKIAA0744, RGD1310748, RGD1563092
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human HDAC9 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • MEF2 binding domain
  • CtBP binding domain
  • transcription regulator
  • catalytic domain
  • transcription co-repressor
  • protein kinase C binding
  • nuclear localization sequence
  • transcription factor binding
  • histone deacetylase binding
  • protein binding
  • Arginase-like and histone-like hydrolases
  • protein deacetylase activity
  • basic helix-loop-helix-leucine zipper domain
  • linear amide carbon-nitrogen bond hydrolase
  • ClassIIa_HDAC_Gln-rich-N
  • histone deacetylase
  • Glutamine rich N terminal domain of histone deacetylase 4

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • neoplasia
  • diffuse large B-cell lymphoma
  • peripheral T-cell lymphoma
  • relapsed peripheral T-cell lymphoma
  • enteropathy-associated T-cell lymphoma
  • angioimmunoblastic T-cell lymphoma
  • epilepsy
  • maculopapular rash
  • tubulo-interstitial fibrosis
  • non-insulin-dependent diabetes mellitus
regulated by
  • IFNG
  • cyclic AMP
  • VEGFA
  • adipocytes
  • DL-2-amino-5-phosphonovaleric acid
  • lipopolysaccharide
  • TNF
  • butyric acid
  • GRIN3A
  • IL10
regulates
  • BCL2
  • Fetal hemoglobin
  • histone H3
  • HDAC1
  • DNA promoter
  • DNA endogenous promoter
  • histone H4
  • reporter gene
  • gamma globin
  • JUN
role in cell
  • cell death
  • expression in
  • binding in
  • apoptosis
  • acetylation in
  • differentiation
  • molecular cleavage in
  • activation
  • organization
  • transcription in

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Nucleus
  • Cytoplasm
  • nucleoplasm

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human HDAC9 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • negative regulation of gene expression, epigenetic
  • B cell differentiation
  • neuron differentiation
  • B cell activation
  • positive regulation of cell migration involved in sprouting angiogenesis
  • cholesterol homeostasis
  • negative regulation of transcription from RNA polymerase II promoter
  • cellular response to insulin stimulus
  • heart development
  • inflammatory response
  • negative regulation of transcription, DNA-dependent
  • response to amphetamine
  • regulation of skeletal muscle fiber development
  • regulation of striated muscle cell differentiation
  • peptidyl-lysine deacetylation
  • negative regulation of cytokine production

Cellular Component

Where in the cell the gene product is active
  • nucleus
  • transcription factor complex
  • cytoplasm
  • histone methyltransferase complex
  • histone deacetylase complex
  • nucleoplasm

Molecular Function

What the gene product does at the molecular level
  • protein kinase C binding
  • histone deacetylase activity (H4-K16 specific)
  • protein binding
  • histone deacetylase binding
  • histone deacetylase activity
  • metal ion binding
  • transcription corepressor activity
  • histone deacetylase activity (H3-K14 specific)
  • protein deacetylase activity
  • histone deacetylase activity (H3-K9 specific)

Gene-Specific Assays for Results You Can Trust

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