XAB2
XAB2 Gene Summary
Involved in mRNA splicing, via spliceosome; transcription, DNA-templated; and transcription-coupled nucleotide-excision repair. Located in nucleoplasm. Part of U2-type catalytic step 2 spliceosome. [provided by Alliance of Genome Resources, Apr 2022]
Details
| Type | Protein Coding |
| Official Symbol | XAB2 |
| Official Name | XPA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:14089] |
| Ensembl ID | ENSG00000076924 |
| Bio databases IDs | |
| Aliases | XPA binding protein 2, SYF1 homolog, RNA splicing factor (S. cerevisiae), SYF1 pre-mRNA-splicing factor |
| Synonyms | 0610041O14RIK,ATH55,HCNP,HCRN,KIAA1177,NTC90,SYF1,XPA binding protein 2 |
| Species | Human, Homo sapiens |
Protein Domains
A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
- protein binding
- tetratricopeptide repeat
Pathways
Biological processes and signaling networks where the XAB2 gene plays a role, providing insight into its function and relevance in health or disease.
Top Findings
The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
binds
- PPIE
- NAA40
- ZRANB1
- DHX8
- PLRG1
- RPA3
- TERF2IP
- TMEM192
- PRPF19
- CHD4
disease
- infection by HIV-1
regulated by
- MYC
- ERCC8
- NOMO
- imiquimod
- Major late
- RNA polymerase II
regulates
- PGAM5
- FAS
- XPA
role in cell
- synthesis in
- cell death
- formation
- splicing by
- formation in
- molecular cleavage in
- replication in
- damage in
- alternative splicing in
- reverse transcription in
Subcellular Expression
Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
- Nucleus
- interchromatin granule cluster fractions
- intracellular membrane-bounded organelle
- catalytic step 2 spliceosome
- spliceosomes
- nucleoplasm
Gene Ontology Annotations
Describes the biological processes, cellular components, and molecular functions associated with the XAB2 gene, providing context for its role in the cell.
BIOLOGICAL PROCESS
Functions and activities the gene product is involved in
- transcription, DNA-dependent
- blastocyst development
- transcription-coupled nucleotide-excision repair
- generation of catalytic spliceosome for first transesterification step
- nuclear mRNA splicing, via spliceosome
CELLULAR COMPONENT
Where in the cell the gene product is active
- nucleus
- catalytic step 2 spliceosome
- post-mRNA release spliceosomal complex
- intracellular membrane-bounded organelle
- membrane
- U2-type catalytic step 2 spliceosome
- Prp19 complex
- nucleoplasm
MOLECULAR FUNCTION
What the gene product does at the molecular level
- protein binding