C9orf72 Gene Summary [Human]

The protein encoded by this gene plays an important role in the regulation of endosomal trafficking, and has been shown to interact with Rab proteins that are involved in autophagy and endocytic transport. Expansion of a GGGGCC repeat from 2-22 copies to 700-1600 copies in the intronic sequence between alternate 5' exons in transcripts from this gene is associated with 9p-linked ALS (amyotrophic lateral sclerosis) and FTD (frontotemporal dementia) (PMID: 21944778, 21944779). Studies suggest that hexanucleotide expansions could result in the selective stabilization of repeat-containing pre-mRNA, and the accumulation of insoluble dipeptide repeat protein aggregates that could be pathogenic in FTD-ALS patients (PMID: 23393093). Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Jul 2016]

Details

Type
Nonsense Mediated Decay
Official Symbol
C9orf72
Official Name
C9orf72-SMCR8 complex subunit [Source:HGNC Symbol;Acc:HGNC:28337]
Ensembl ID
ENSG00000147894
Bio databases IDs NCBI: 203228 Ensembl: ENSG00000147894
Aliases C9orf72-SMCR8 complex subunit
Synonyms 3110043O21Rik, ALSFTD, C9orf72, member of C9orf72-SMCR8 complex, C9orf72-SMCR8 complex subunit, DENND9, DENNL72, FLJ11109, FTDALS, FTDALS1, RGD1359108, similar to RIKEN cDNA 3110043O21
Species
Human, Homo sapiens
OrthologiesMouseRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in human C9orf72 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • C9orf72-like protein family
  • guanyl-nucleotide exchange factor
  • Gly-Ala repeat
  • enzyme binding
  • GTPase activator
  • protein binding

Pathways

Biological processes and signaling networks where the C9orf72 gene in human plays a role, providing insight into its function and relevance in health or disease.

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • sporadic amyotrophic lateral sclerosis
  • amyotrophic lateral sclerosis
  • frontotemporal dementia and/or amyotrophic lateral sclerosis type 1
  • poor social function
  • mood disorder
  • susceptibility to amyotrophic lateral sclerosis
  • familial amyotrophic lateral sclerosis
regulated by
  • dexamethasone
  • troglitazone
  • SRPK1
  • progesterone
  • decitabine
  • nelarabine
  • SMCR8
  • C9orf72
  • ritonavir
  • rifampin
role in cell
  • cell death
  • quantity
  • expression in
  • phosphorylation in
  • autophagy by
  • number
  • extension
  • survival
  • morphology
  • accumulation

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Cytoplasm
  • glutaminergic synapse
  • axon component
  • intracellular membrane-bounded organelle
  • cytoplasmic mRNA processing body
  • presynaptic regions
  • Extracellular Space
  • postsynaptic region
  • Nucleus
  • endosomes
  • lysosome
  • Flemming body
  • cytosol
  • nuclear envelope
  • neurites
  • synapse
  • autophagic vacuoles
  • stress granule
  • perikaryon
  • dendrites

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the human C9orf72 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • positive regulation of macroautophagy
  • stress granule assembly
  • axon extension
  • regulation of protein localization
  • autophagy
  • negative regulation of protein phosphorylation
  • regulation of autophagy
  • regulation of autophagic vacuole assembly
  • endocytosis
  • positive regulation of GTPase activity

Cellular Component

Where in the cell the gene product is active
  • cytoplasmic stress granule
  • cytoplasmic mRNA processing body
  • main axon
  • perikaryon
  • autophagic vacuole
  • lysosome
  • dendrite
  • nucleus
  • extracellular space
  • nuclear membrane
  • endosome
  • axonal growth cone
  • cytoplasm
  • intracellular membrane-bounded organelle
  • cytosol
  • guanyl-nucleotide exchange factor complex

Molecular Function

What the gene product does at the molecular level
  • protein binding
  • guanyl-nucleotide exchange factor activity
  • small GTPase binding

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.