Mmp13 Gene Summary [Mouse]

This gene encodes a member of the matrix metalloproteinase family that plays a role in wound healing, skeletal development and bone remodeling. The encoded protein is activated by the removal of an N-terminal activation peptide to generate a zinc-dependent endopeptidase enzyme that can cleave various native collagens, including types I - IV, X and XIV. Mice lacking the encoded protein display profound defects in growth plate cartilage as well as a delay in the endochondral bone development. Lack of the encoded protein also impairs the wound healing process due to reduced keratinocyte migration and vascular density at the wound site. This gene is located in a cluster of other matrix metalloproteinase genes on chromosome 9. [provided by RefSeq, Jun 2015]

Details

Type
Protein Coding
Official Symbol
Mmp13
Official Name
matrix metallopeptidase 13 [Source:MGI Symbol;Acc:MGI:1340026]
Ensembl ID
ENSMUSG00000050578
Bio databases IDs NCBI: 17386 Ensembl: ENSMUSG00000050578
Aliases matrix metallopeptidase 13
Synonyms Clg, CLG3, Collagenase 1, MANDP1, matrix metallopeptidase 13, Matrix Metalloproteinase 13, MDST, Mmp1
Species
Mouse, Mus musculus
OrthologiesHumanRat

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in mouse Mmp13 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • calcium-dependent protein binding
  • Matrixin
  • Hemopexin-like repeats
  • peptidase
  • HX
  • calcium ion binding
  • low-density lipoprotein receptor binding
  • Zinc-dependent metalloprotease
  • fibronectin binding
  • Putative peptidoglycan binding domain
  • ZnMc
  • endopeptidase
  • serine endopeptidase
  • zinc ion binding
  • collagen binding
  • metalloendopeptidase

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
binds
disease
  • hepatocellular carcinoma
  • cancer
  • breast cancer
  • colon adenocarcinoma
  • lung cancer
  • esophageal carcinoma
  • rectum cancer
  • rectal adenocarcinoma
  • gastric adenocarcinoma
  • pancreatic adenocarcinoma
regulated by
role in cell
  • activation in
  • survival
  • phosphorylation in
  • invasion by
  • molecular cleavage in
  • quantity
  • activity
  • degradation in
  • activation
  • tubulation

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Extracellular Space
  • Cytoplasm
  • Plasma Membrane
  • intercellular junctions
  • extracellular matrix
  • plasma

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the mouse Mmp13 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • bone mineralization
  • growth plate cartilage development
  • extracellular matrix disassembly
  • proteolysis
  • bone morphogenesis
  • extracellular matrix organization
  • endochondral ossification
  • collagen catabolic process

Cellular Component

Where in the cell the gene product is active
  • extracellular space
  • extracellular matrix
  • extracellular region

Molecular Function

What the gene product does at the molecular level
  • zinc ion binding
  • collagen binding
  • calcium ion binding
  • serine-type endopeptidase activity
  • endopeptidase activity
  • metalloendopeptidase activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.