Mmp13 Gene Summary [Rat]

Enables several functions, including fibronectin binding activity; low-density lipoprotein particle receptor binding activity; and metal ion binding activity. Involved in several processes, including embryonic hindlimb morphogenesis; endochondral ossification; and estrous cycle. Located in extracellular space and intercellular canaliculus. Used to study brain ischemia; degenerative disc disease; and myocardial infarction. Biomarker of several diseases, including bone disease (multiple); gastric ulcer; liver cirrhosis (multiple); meningococcal meningitis; and silicosis. Human ortholog(s) of this gene implicated in anodontia; artery disease (multiple); bone disease (multiple); and ovarian carcinoma. Orthologous to human MMP13 (matrix metallopeptidase 13). [provided by Alliance of Genome Resources, Jul 2025]

Details

Type
Protein Coding
Official Symbol
Mmp13
Official Name
matrix metallopeptidase 13 [Source:RGD Symbol;Acc:620196]
Ensembl ID
ENSRNOG00000008478
Bio databases IDs NCBI: 171052 Ensembl: ENSRNOG00000008478
Aliases matrix metallopeptidase 13
Synonyms Clg, CLG3, Collagenase 1, MANDP1, matrix metallopeptidase 13, Matrix Metalloproteinase 13, MDST, Mmp1
Species
Rat, Rattus norvegicus
OrthologiesHumanMouse

Protein Domains

A protein domain is a distinct structural or functional region within a protein that can evolve, function, and exist independently of the rest of the protein chain. These domains in rat Mmp13 often fold into stable, three-dimensional structures and are associated with specific biological functions, such as binding to DNA, other proteins, or small molecules.
  • calcium-dependent protein binding
  • Matrixin
  • Hemopexin-like repeats
  • peptidase
  • HX
  • calcium ion binding
  • low-density lipoprotein receptor binding
  • Zinc-dependent metalloprotease
  • fibronectin binding
  • Putative peptidoglycan binding domain
  • ZnMc
  • endopeptidase
  • serine endopeptidase
  • zinc ion binding
  • collagen binding
  • metalloendopeptidase

Top Findings

The most significant associations for this gene, including commonly observed domains, pathway involvement, and functional highlights based on current data.
disease
  • hepatocellular carcinoma
  • cancer
  • breast cancer
  • colon adenocarcinoma
  • lung cancer
  • esophageal carcinoma
  • rectum cancer
  • rectal adenocarcinoma
  • gastric adenocarcinoma
  • pancreatic adenocarcinoma
regulated by
role in cell
  • activation in
  • survival
  • phosphorylation in
  • invasion by
  • molecular cleavage in
  • quantity
  • activity
  • degradation in
  • activation
  • tubulation

Subcellular Expression

Locations within the cell where the protein is known or predicted to be active, providing insight into its function and cellular context.
  • Extracellular Space
  • Cytoplasm
  • Plasma Membrane
  • intercellular junctions
  • extracellular matrix
  • plasma

Gene Ontology Annotations

Describes the biological processes, cellular components, and molecular functions associated with the rat Mmp13 gene, providing context for its role in the cell.

Biological Process

Functions and activities the gene product is involved in
  • bone mineralization
  • growth plate cartilage development
  • extracellular matrix disassembly
  • proteolysis
  • bone morphogenesis
  • extracellular matrix organization
  • endochondral ossification
  • collagen catabolic process

Cellular Component

Where in the cell the gene product is active
  • extracellular space
  • extracellular matrix
  • extracellular region

Molecular Function

What the gene product does at the molecular level
  • zinc ion binding
  • collagen binding
  • calcium ion binding
  • serine-type endopeptidase activity
  • endopeptidase activity
  • metalloendopeptidase activity

Gene-Specific Assays for Results You Can Trust

Streamline your workflow with assays designed for this gene. Our targeted dPCR and qPCR assays help you generate meaningful data – efficiently and accurately.