Target List
Covers specific sides of specific exons of the targeted genes.
Bone Cancer
EWSR1-ATF1EWSR1-ERGEWSR1-ETV1EWSR1-ETV4EWSR1-FEVEWSR1-FLI1
Breast Cancer
CRTC1-MAML2EML4-ALKETV6-NTRK3 (TEL-NTRK3)FGFR1-ZNF703RAF1-DAZL
Clear Cell Sarcoma
EWSR1-ATF1EWSR1-CREB1
Central Nervous System Cancer
CLCN6-BRAFEWSR1-FLI1FAM131B-BRAFFGFR1-TACC1FGFR3-TACC3GNAI1-BRAFGOPC-ROS1MKRN1-BRAFRNF130-BRAFSRGAP3-RAF1
Colorectal Cancer
EML4-ALKETV6-NTRK3 (TEL-NTRK3)LMNA-NTRK1TPM3-NTRK1VTI1A-TCF7L2
Ewing's Sarcoma
EWSR1-ERGEWSR1-ETV1EWSR1-ETV4EWSR1-FEVEWSR1-FLI1
Gastric Cancer
SLC34A2-ROS1SND1-BRAF
Glioma
GOPC-ROS1SRGAP3-RAF1
Inflammatory Myofibroblastic Tumor
ATIC-ALKCARS-ALKCLTC-ALKRANBP2-ALKSEC31A-ALKTPM3-ALKTPM4-ALK
Kidney Cancer
ASPSCR1-TFE3ETV6-NTRK3 (TEL-NTRK3)PRCC-TFE3VCL-ALK
Leukemia
Acute Lymphoblastic Leukemia
BCR-ABL1BCR-JAK2EML1-ABL1ETV6-ABL2 (TEL-ABL2)ETV6-JAK2 (TEL-JAK2)ETV6-NCOA2 (TEL-NCOA2)ETV6-RUNX1 (TEL-AML1)EWSR1-ZNF384 (EWSR1-CIZ)FGFR1OP-FGFR1JAK2-PAX5KMT2A-ACTN4 (MLL-ACTN4)KMT2A-AFF1 (MLL-AF4, MLL-MLLT2)KMT2A-AFF3 (MLL-LAF4)KMT2A-CASC5 (MLL-CASC5)KMT2A-EPS15 (MLL-EPS15)KMT2A-FOXO4 (MLL-AFX)KMT2A-FRYL (MLL-FRYL)KMT2A-GAS7 (MLL-GAS7)KMT2A-GPHN (MLL-GPHN)KMT2A-MLLT1 (MLL-ENL)KMT2A-MLLT10 (MLL-AF10)KMT2A-MLLT3 (MLL-AF9)KMT2A-AFDN (MLL-AF6)KMT2A-TET1 (MLL-TET1)MNX1-ETV6 (HLBX9-TEL)NUP214-ABL1NUP98-LNP1 (NUP98-LOC348801)NUP98-RAP1GDS1P2RY8-CRLF2PAX5-AUTS2PAX5-ELNPAX5-ETV6 (PAX5-TEL)PAX5-FOXP1PAX5-JAK2PAX5-PMLPCM1-JAK2PICALM-MLLT10 (PICALM-AF10, CALM-AF10)RCSD1-ABL1SET-NUP214SFPQ-ABL1STIL-TAL1 (SIL-TAL1)TAF15-ZNF384 (TAF15-CIZ)TCF3-HLF (E2A-HLF)TCF3-PBX1 (E2A-PBX1)ZMIZ1-ABL1
Acute Myeloid Leukemia
BCOR-RARABCR-JAK2CBFA2T3-GLIS2CBFB-MYH11CCDC88C-PDGFRB (KIAA1509-PDGFRB)CHIC2-ETV6 (BTL-ETV6)DEK-NUP214 (DEK-CAN)DHH-RHEBL1ETV6-NCOA2 (TEL-NCOA2)ETV6-NTRK3 (TEL-NTRK3)ETV6-PDGFRB (TEL-PDGFRB)ETV6-PTPRR (TEL-PTPRR)ETV6-RUNX1 (TEL-AML1)FIP1L1-PDGFRAFIP1L1-RARAFUS-ERGKAT6A-CREBBP (MOZ-CBP)KAT6A-EP300 (MOZ-P300)KAT6A-NCOA2 (MOZ-TIF2)KMT2A-ABI1 (MLL-ABI1)KMT2A-ARHGAP26 (MLL-GRAF)KMT2A-ARHGEF12 (MLL-LARG)KMT2A-CASC5 (MLL-CASC5)KMT2A-CBL (MLL-CBL)KMT2A-CEP170B (MLL-CEP170B, MLL-KIAA0284)KMT2A-CREBBP (MLL-CBP)KMT2A-ELL (MLL-ELL)KMT2A-EP300 (MLL-EP300)KMT2A-EPS15 (MLL-EPS15)KMT2A-FNBP1 (MLL-FNBP1, MLL-FBP17)KMT2A-FOXO4 (MLL-AFX)KMT2A-FRYL (MLL-FRYL)KMT2A-GAS7 (MLL-GAS7)KMT2A-GPHN (MLL-GPHN)KMT2A-MAML2 (MLL-MAML2)KMT2A-MLLT1 (MLL-ENL)KMT2A-MLLT10 (MLL-AF10)KMT2A-MLLT11 (MLL-AF1Q)KMT2A-MLLT3 (MLL-AF9)KMT2A-AFDN (MLL-AF6)KMT2A-MLLT6 (MLL-AF17)KMT2A-MYO1F (MLL-MYO1F)KMT2A-SEPT2 (MLL-SEPT2)KMT2A-SEPT5 (MLL-SEPT5)KMT2A-SEPT6 (MLL-SEPT6)KMT2A-SEPT9 (MLL-SEPT9)KMT2A-TET1 (MLL-TET1)MN1-ETV6 (MN1-TEL)MNX1-ETV6 (HLBX9-TEL)MYB-GATA1NPM1-MLF1NPM1-RARANUMA1-RARA (NUMA-RARA)NUP98-DDX10NUP98-HOXA9NUP98-HOXD13NUP98-KDM5A (NUP98-JARID1A)NUP98-LNP1 (NUP98-LOC348801)NUP98-NSD1NUP98-PHF23NUP98-PRRX1 (NUP98-PMX1)NUP98-PSIP1 (NUP98-LEDGF)NUP98-TOP1NUP98-WHSC1L1 (NUP98-NSD3)PCM1-JAK2PICALM-MLLT10 (PICALM-AF10, CALM-AF10)PML-RARARANBP2-ALKRBM15-MKL1 (OTT-MAL)RPN1-MECOM (RPN1-EVI1)RUNX1-CBFA2T3 (AML1-CBFA2T3)RUNX1-MECOM (AML1-MDS1-EVI1)RUNX1-PRDM16 (AML1-PRDM16)RUNX1-RPL22RUNX1-RUNX1T1 (AML1-ETO)RUNX1-USP42 (AML1-USP42)SET-NUP214STAT5B-RARATAF15-ZNF384 (TAF15-CIZ)TRIP11-PDGFRB (CEV14-PDGFRB)ZBTB16-RARA (PLZF-RARA)
Chronic Myeloid Leukemia
BCR-ABL1BCR-JAK2CCDC88C-PDGFRB (KIAA1509-PDGFRB)NDE1-PDGFRBRUNX1-MECOM (AML1-MDS1-EVI1)
Myeloproliferative Neoplasms
BCR-FGFR1BCR-JAK2BCR-PDGFRACNTRL-FGFR1 (CEP110-FGFR1)ETV6-ABL1 (TEL-ABL1)ETV6-FLT3 (TEL-FLT3)ETV6-JAK2 (TEL-JAK2)ETV6-MECOM (TEL-MDS1-EVI1)ETV6-PDGFRB (TEL-PDGFRB)FGFR1OP-FGFR1FIP1L1-RARAMN1-ETV6 (MN1-TEL)NPM1-MLF1NUP98-HOXA9NUP98-HOXD13NUP98-PSIP1 (NUP98-LEDGF)PRKG2-PDGFRBRUNX1-MECOM (AML1-MDS1-EVI1)
Myelodysplastic Syndromes
DEK-NUP214 (DEK-CAN)ETV6-GOT1 (TEL-GOT1)ETV6-JAK2 (TEL-JAK2)ETV6-PTPRR (TEL-PTPRR)KMT2A-ACTN4 (MLL-ACTN4)KMT2A-CASC5 (MLL-CASC5)KMT2A-FRYL (MLL-FRYL)KMT2A-MAML2 (MLL-MAML2)MN1-ETV6 (MN1-TEL)MNX1-ETV6 (HLBX9-TEL)NDE1-PDGFRBNPM1-MLF1NUP98-HOXD13NUP98-LNP1 (NUP98-LOC348801)NUP98-TOP1PCM1-JAK2RUNX1-MECOM (AML1-MDS1-EVI1)RUNX1-PRDM16 (AML1-PRDM16)ZMYM2-FGFR1
Lymphoma
ALK-MSNATIC-ALKBIRC3-MALT1CLTC-ALKETV6-FGFR3MSN-ALKNPM1-ALKSQSTM1-ALKTFG-ALKTPM3-ALKTPM4-ALK
Liver Cancer
FGFR2-CCDC6FGFR2-TACC3
Lung Cancer
CCDC6-RETCD74-NRG1CD74-NTRK1CD74-ROS1CRTC1-MAML2CUX1-RETEML4-ALKEZR-ROS1FGFR3-TACC3GOPC-ROS1KIF5B-ALKKIF5B-RETKLC1-ALKLRIG3-ROS1MPRIP-NTRK1NCOA4-RETSDC4-ROS1SLC34A2-ROS1SND1-BRAFSTRN-ALKTFG-ALKTPM3-ROS1TRIM33-RET
Melanoma
AGK-BRAFEWSR1-ATF1EWSR1-CREB1PAPSS1-BRAFTRIM24-BRAF
Non-Small Cell Lung Cancer
BAG4-FGFR1CCDC6-RETCD74-NRG1CD74-ROS1EML4-ALKEZR-ROS1GOPC-ROS1HIP1-ALKKIF5B-ALKKIF5B-RETKLC1-ALKLRIG3-ROS1SDC4-ROS1SLC34A2-ROS1STRN-ALKTFG-ALKTPM3-ROS1TPR-ALKTRIM33-RET
Pancreatic Cancer
EWSR1-FLI1GATM-BRAFHACL1-RAF1HERPUD1-BRAFSND1-BRAFZSCAN30-BRAF
Prostate Cancer
ESRP1-RAF1RAF1-ESRP1SLC45A3-BRAFSND1-BRAFTMPRSS2-ERGUBE2L3-KRAS
Salivary Gland Cancer
CRTC1-MAML2ETV6-NTRK3 (TEL-NTRK3)FGFR1-PLAG1
Sarcomas
ASPSCR1-TFE3COL1A1-PDGFBETV6-NTRK3 (TEL-NTRK3)EWSR1-DDIT3EWSR1-WT1FUS-DDIT3LMNA-NTRK1NPM1-ALKPAX3-FOXO1PAX7-FOXO1SS18-SSX1SS18-SSX2
Skin Cancer
CEP89-BRAFCRTC1-MAML2ERC1-ROS1EWSR1-ATF1FCHSD1-BRAFGOLGA5-RETKIF5B-RETLSM14A-BRAFMYO5A-ROS1PPFIBP1-ROS1PWWP2A-ROS1SQSTM1-ALKTPM3-ALK
Soft Tissue Cancer
ASPSCR1-TFE3ATIC-ALKCARS-ALKCLTC-ALKCOL1A1-PDGFBDCTN1-ALKETV6-NTRK3 (TEL-NTRK3)EWSR1-ATF1EWSR1-CREB1EWSR1-DDIT3EWSR1-ERGEWSR1-ETV1EWSR1-ETV4EWSR1-FEVEWSR1-FLI1EWSR1-WT1FN1-ALKFUS-DDIT3NCOA4-RETPAX3-FOXO1PAX7-FOXO1PPFIBP1-ALKRANBP2-ALKSEC31A-ALKSS18-SSX1SS18-SSX2TPM3-ALKTPM4-ALK
Thyroid Cancer
AKAP9-BRAFCCDC6-RETCRTC1-MAML2EML4-ALKERC1-RETETV6-NTRK3 (TEL-NTRK3)GOLGA5-RETHOOK3-RETNCOA4-RETNTRK1-TFGNTRK1-TPM3PAX8-PPARGPCM1-RETPRKAR1A-RETRET-GOLGA5STRN-ALKTFG-NTRK1TPM3-NTRK1TRIM24-RETTRIM27-RETTRIM33-RET
Urinary Tract Cancer
FGFR3-BAIAP2L1FGFR3-TACC3